IL_2HOL_002

3D structure

PDB id

2HOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*CUGAGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2HOL_002 not in the Motif Atlas

Geometric match to IL_7TZS_002

Geometric discrepancy: 0.2214

The information below is about IL_7TZS_002

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_38394.1

Basepair signature

cWW-tWH-cWW-L-L-R-L

Number of instances in this motif group

2

Unit IDs

2HOL|1|A|U|20
2HOL|1|A|G|21
*
2HOL|1|A|C|38
2HOL|1|A|U|39
2HOL|1|A|G|40
2HOL|1|A|A|41
2HOL|1|A|G|42
2HOL|1|A|A|43
2HOL|1|A|A|44
2HOL|1|A|A|45

Current chains

Chain A

thi-box riboswitch

Nearby chains