Motif IL_38394.1 Version IL_38394.1 of this group appears in releases 3.77 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 2-6 | 8-9 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8F4O_006 | 8F4O | 0.0000 | 0 | B | TPP riboswitch (THI element) | C | 38 | U | 39 | G | 40 | A | 41 | G | 42 | A | 43 | A | 44 | A | 45 | * | U | 20 | G | 21 | cWW | ntWH | cWW | |
2 | IL_7TZS_002 | 7TZS | 0.3308 | 0 | Stack outside cWW | X | TPP riboswitch (THI element) | C | 38 | U | 39 | G | 40 | A | 41 | G | 42 | A | 43 | A | 44 | A | 45 | * | U | 20 | G | 21 | cWW | tWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUGAGAAA*UG | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGAGAA* | 2 |
Release history
Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Stack outside cWW (1)
- (1)
- Basepair signature
- cWW-tWH-cWW-L-L-R-L
- Heat map statistics
- Min 0.33 | Avg 0.17 | Max 0.33
Coloring options: