IL_2IL9_001

3D structure

PDB id

2IL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCU*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_42334.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

2IL9|1|A|G|6079
2IL9|1|A|U|6080
2IL9|1|A|C|6081
2IL9|1|A|U|6082
*
2IL9|1|A|G|6110
2IL9|1|A|G|6111
2IL9|1|A|A|6112
2IL9|1|A|C|6113

Current chains

Chain A

Ribosomal Binding Domain of the IRES RNA

Nearby chains

Chain M

Ribosomal Binding Domain of the IRES RNA