Motif IL_42334.1 Version IL_42334.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2IL9_001 | 2IL9 | 0.6412 | 0 | Tandem non-canonical cWW pairs | A | Ribosomal Binding Domain of the IRES RNA | G | 6079 | U | 6080 | C | 6081 | U | 6082 | * | G | 6110 | G | 6111 | A | 6112 | C | 6113 | cWW | cWW | ||
| 2 | IL_7R9F_001 | 7R9F | 0.6409 | 0 | B | RNA (18-mer) | C | 5 | G | 6 | G | 7 | G | 8 | * | C | 5||||8_555 | G | 6||||8_555 | G | 7||||8_555 | G | 8||||8_555 | cWW | cWW | |||
| 3 | IL_4V88_466 | 4V88 | 0.0000 | 1 | Non canonical cWW and near pair | A6 | SSU rRNA | C | 1644 | G | 1645 | C | 1646 | U | 1647 | * | A | 1753 | A | 1754 | A | 1756||A | G | 1757 | cWW | ncWW | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCU*GGAC | 1 |
| CGGG*CGGG | 1 |
| CGCU*AAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*GA | 1 |
| GG*GG | 1 |
| GC*AAA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (1)
- Non canonical cWW and near pair (1)
- (1)
- Basepair signature
- cWW-L-R-L-R-cWW
- Heat map statistics
- Min 0.44 | Avg 0.38 | Max 0.64
Coloring options: