IL_2IL9_004

3D structure

PDB id

2IL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAAA*UUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2IL9_004 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3849

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

2IL9|1|M|A|6022
2IL9|1|M|A|6023
2IL9|1|M|A|6024
2IL9|1|M|A|6025
*
2IL9|1|M|U|6054
2IL9|1|M|U|6055
2IL9|1|M|U|6056
2IL9|1|M|U|6057

Current chains

Chain M

Ribosomal Binding Domain of the IRES RNA

Nearby chains