IL_2J28_018

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

2J28|1|B|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_018 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3854

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

2J28|1|B|C|274
2J28|1|B|C|275
2J28|1|B|U|276
2J28|1|B|G|277
2J28|1|B|A|278
2J28|1|B|A|279
2J28|1|B|U|280
2J28|1|B|C|281
*
2J28|1|B|G|359
2J28|1|B|U|360
2J28|1|B|G|361
2J28|1|B|A|362
2J28|1|B|G|363

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains