IL_2J28_020
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 2J28|1|B|A|504, 2J28|1|B|A|508
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2J28_020 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.0962
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
2J28|1|B|G|481
2J28|1|B|A|482
2J28|1|B|A|483
2J28|1|B|C|484
*
2J28|1|B|G|496
2J28|1|B|A|497
2J28|1|B|G|498
2J28|1|B|U|499
2J28|1|B|G|500
2J28|1|B|A|501
2J28|1|B|A|502
2J28|1|B|A|503
2J28|1|B|A|504
2J28|1|B|A|505
2J28|1|B|G|506
2J28|1|B|A|507
2J28|1|B|A|508
2J28|1|B|C|509
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 9
- SIGNAL RECOGNITION PARTICLE 54
- Chain S
- 50S RIBOSOMAL PROTEIN L22
- Chain U
- 50S RIBOSOMAL PROTEIN L24
Coloring options: