IL_2J28_032

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

2J28|1|B|U|846, 2J28|1|B|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_032 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.342

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

2J28|1|B|A|844
2J28|1|B|A|845
2J28|1|B|U|846
2J28|1|B|U|847
2J28|1|B|C|848
*
2J28|1|B|G|930
2J28|1|B|U|931
2J28|1|B|U|932
2J28|1|B|A|933
2J28|1|B|U|934

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain Y

50S RIBOSOMAL PROTEIN L30