IL_2J28_034

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGG*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_034 not in the Motif Atlas

Geometric match to IL_5TBW_068

Geometric discrepancy: 0.2152

The information below is about IL_5TBW_068

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

2J28|1|B|G|856
2J28|1|B|G|857
2J28|1|B|G|858
*
2J28|1|B|U|919
2J28|1|B|A|920
2J28|1|B|C|921

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain W

50S RIBOSOMAL PROTEIN L27

Chain Y

50S RIBOSOMAL PROTEIN L30