3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
2J28|1|B|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2J28_040 not in the Motif Atlas
Homologous match to IL_5J7L_277
Geometric discrepancy: 0.0756
The information below is about IL_5J7L_277
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

2J28|1|B|C|998
2J28|1|B|U|999
2J28|1|B|A|1000
2J28|1|B|A|1001
2J28|1|B|G|1002
*
2J28|1|B|C|1153
2J28|1|B|G|1154
2J28|1|B|A|1155
2J28|1|B|A|1156
2J28|1|B|G|1157

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain A
5S ribosomal RNA; 5S rRNA
Chain Q
50S RIBOSOMAL PROTEIN L20
Chain R
50S RIBOSOMAL PROTEIN L21
Chain Y
50S RIBOSOMAL PROTEIN L30

Coloring options:


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