IL_2J28_040
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 2J28|1|B|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2J28_040 not in the Motif Atlas
- Homologous match to IL_5J7L_277
- Geometric discrepancy: 0.0756
- The information below is about IL_5J7L_277
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
2J28|1|B|C|998
2J28|1|B|U|999
2J28|1|B|A|1000
2J28|1|B|A|1001
2J28|1|B|G|1002
*
2J28|1|B|C|1153
2J28|1|B|G|1154
2J28|1|B|A|1155
2J28|1|B|A|1156
2J28|1|B|G|1157
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain A
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain R
- 50S RIBOSOMAL PROTEIN L21
- Chain Y
- 50S RIBOSOMAL PROTEIN L30
Coloring options: