IL_2J28_043

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

2J28|1|B|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_043 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1708

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

2J28|1|B|U|1018
2J28|1|B|U|1019
2J28|1|B|A|1020
2J28|1|B|A|1021
2J28|1|B|G|1022
2J28|1|B|U|1023
2J28|1|B|G|1024
*
2J28|1|B|C|1140
2J28|1|B|U|1141
2J28|1|B|A|1142
2J28|1|B|A|1143
2J28|1|B|A|1144

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L6

Chain J

50S RIBOSOMAL PROTEIN L13