3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CGAGG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2J28_056 not in the Motif Atlas
Homologous match to IL_5J7L_293
Geometric discrepancy: 0.081
The information below is about IL_5J7L_293
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

2J28|1|B|C|1357
2J28|1|B|G|1358
2J28|1|B|A|1359
2J28|1|B|G|1360
2J28|1|B|G|1361
*
2J28|1|B|C|1370
2J28|1|B|G|1371
2J28|1|B|U|1372
2J28|1|B|A|1373
2J28|1|B|G|1374

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain 2
50S RIBOSOMAL PROTEIN L34
Chain C
50S RIBOSOMAL PROTEIN L2

Coloring options:


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