IL_2J28_058

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

2J28|1|B|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_058 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0941

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2J28|1|B|C|1417
2J28|1|B|G|1418
2J28|1|B|A|1419
2J28|1|B|A|1420
2J28|1|B|G|1421
*
2J28|1|B|C|1577
2J28|1|B|U|1578
2J28|1|B|A|1579
2J28|1|B|A|1580
2J28|1|B|G|1581

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains