IL_2J28_070

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

2J28|1|B|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_070 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0755

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

2J28|1|B|C|1686
2J28|1|B|G|1687
2J28|1|B|U|1688
2J28|1|B|A|1689
2J28|1|B|A|1690
2J28|1|B|C|1691
*
2J28|1|B|G|1696
2J28|1|B|G|1697
2J28|1|B|A|1698
2J28|1|B|G|1699
2J28|1|B|A|1700
2J28|1|B|A|1701
2J28|1|B|G|1702

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2