IL_2J28_079

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_079 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1619

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

2J28|1|B|U|1864
2J28|1|B|U|1865
2J28|1|B|A|1866
2J28|1|B|G|1867
*
2J28|1|B|C|1874
2J28|1|B|G|1875
2J28|1|B|A|1876
2J28|1|B|A|1877
2J28|1|B|G|1878

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains