IL_2J28_081

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

2J28|1|B|A|1938, 2J28|1|B|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_081 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1326

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2J28|1|B|C|1934
2J28|1|B|G|1935
2J28|1|B|A|1936
2J28|1|B|A|1937
2J28|1|B|A|1938
2J28|1|B|U|1939
2J28|1|B|U|1940
2J28|1|B|C|1941
2J28|1|B|C|1942
2J28|1|B|U|1943
2J28|1|B|U|1944
2J28|1|B|G|1945
*
2J28|1|B|C|1961
2J28|1|B|C|1962
2J28|1|B|U|1963
2J28|1|B|G|1964

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains