IL_2J28_096

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_096 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.0926

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

2J28|1|B|A|2459
2J28|1|B|U|2460
2J28|1|B|A|2461
*
2J28|1|B|U|2489
2J28|1|B|G|2490
2J28|1|B|U|2491
2J28|1|B|U|2492
2J28|1|B|U|2493

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L16