IL_2J28_097

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_097 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.0633

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

2J28|1|B|C|2466
2J28|1|B|C|2467
2J28|1|B|A|2468
2J28|1|B|A|2469
2J28|1|B|G|2470
*
2J28|1|B|C|2480
2J28|1|B|G|2481
2J28|1|B|A|2482
2J28|1|B|C|2483
2J28|1|B|G|2484

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain M

50S RIBOSOMAL PROTEIN L16