IL_2J28_109

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2J28_109 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.1158

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

2J28|1|B|C|2806
2J28|1|B|U|2807
2J28|1|B|G|2808
2J28|1|B|A|2809
2J28|1|B|A|2810
2J28|1|B|G|2811
*
2J28|1|B|C|2889
2J28|1|B|G|2890
2J28|1|B|U|2891
2J28|1|B|G|2892

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3

Chain S

50S RIBOSOMAL PROTEIN L22