IL_2JL6_006
3D structure
- PDB id
- 2JL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2JL6_006 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.0501
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
2JL6|1|A|G|188
2JL6|1|A|G|189
2JL6|1|A|A|190
2JL6|1|A|A|191
2JL6|1|A|C|192
2JL6|1|A|U|193
2JL6|1|A|G|194
*
2JL6|1|A|C|201
2JL6|1|A|U|202
2JL6|1|A|C|203
2JL6|1|A|A|204
2JL6|1|A|G|205
2JL6|1|A|U|206
2JL6|1|A|A|207
2JL6|1|A|C|208
Current chains
- Chain A
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 1
- 50S RIBOSOMAL PROTEIN L28
- Chain 7
- 50S RIBOSOMAL PROTEIN L34
- Chain 8
- 50S RIBOSOMAL PROTEIN L35
- Chain P
- 50S RIBOSOMAL PROTEIN L15
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