IL_2JL6_007

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_007 not in the Motif Atlas

Geometric match to IL_7RQB_007

Geometric discrepancy: 0.0571

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

2JL6|1|A|U|239
2JL6|1|A|G|240
2JL6|1|A|A|241
2JL6|1|A|G|242
2JL6|1|A|U|243
2JL6|1|A|A|244
2JL6|1|A|G|245
*
2JL6|1|A|C|253
2JL6|1|A|G|254
2JL6|1|A|A|255
2JL6|1|A|A|256
2JL6|1|A|A|257
2JL6|1|A|G|258

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 8

50S RIBOSOMAL PROTEIN L35

Chain P

50S RIBOSOMAL PROTEIN L15