IL_2JL6_018

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

2JL6|1|A|G|801, 2JL6|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_018 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.084

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

2JL6|1|A|G|674
2JL6|1|A|A|675
2JL6|1|A|A|676
2JL6|1|A|A|677
2JL6|1|A|C|678
*
2JL6|1|A|G|799
2JL6|1|A|A|800
2JL6|1|A|G|801
2JL6|1|A|A|802
2JL6|1|A|U|803
2JL6|1|A|A|804
2JL6|1|A|G|805
2JL6|1|A|C|806

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S RIBOSOMAL PROTEIN L4

Chain P

50S RIBOSOMAL PROTEIN L15