IL_2JL6_024

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_024 not in the Motif Atlas

Geometric match to IL_4WF9_028

Geometric discrepancy: 0.0812

The information below is about IL_4WF9_028

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

2JL6|1|A|C|837
2JL6|1|A|C|838
*
2JL6|1|A|G|940
2JL6|1|A|A|941
2JL6|1|A|G|942

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L30

Chain 8

50S RIBOSOMAL PROTEIN L35

Chain P

50S RIBOSOMAL PROTEIN L15