IL_2JL6_025

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

2JL6|1|A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_025 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.3414

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

2JL6|1|A|C|844
2JL6|1|A|G|845
2JL6|1|A|C|846
*
2JL6|1|A|G|931
2JL6|1|A|G|932
2JL6|1|A|A|933
2JL6|1|A|G|934

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L30