IL_2JL6_038

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

2JL6|1|A|U|1142, 2JL6|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_038 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1009

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

2JL6|1|A|C|1018
2JL6|1|A|U|1019
2JL6|1|A|A|1020
2JL6|1|A|A|1021
2JL6|1|A|G|1022
2JL6|1|A|U|1023
2JL6|1|A|G|1024
*
2JL6|1|A|C|1140
2JL6|1|A|U|1141
2JL6|1|A|U|1142
2JL6|1|A|A|1142|||A
2JL6|1|A|A|1143
2JL6|1|A|G|1144

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 9

50S RIBOSOMAL PROTEIN L36

Chain H

50S RIBOSOMAL PROTEIN L6

Chain N

50S RIBOSOMAL PROTEIN L13