IL_2JL6_068

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

2JL6|1|A|C|1838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_068 not in the Motif Atlas

Geometric match to IL_4V9F_066

Geometric discrepancy: 0.1189

The information below is about IL_4V9F_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

2JL6|1|A|C|1837
2JL6|1|A|C|1838
2JL6|1|A|G|1839
2JL6|1|A|G|1840
*
2JL6|1|A|C|1902
2JL6|1|A|G|1903

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L2