IL_2JL6_102

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

2JL6|1|A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_102 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.0862

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2JL6|1|A|G|2737
2JL6|1|A|A|2738
2JL6|1|A|U|2739
2JL6|1|A|A|2740
2JL6|1|A|A|2741
2JL6|1|A|C|2742
*
2JL6|1|A|G|2762
2JL6|1|A|G|2763
2JL6|1|A|A|2764
2JL6|1|A|A|2765
2JL6|1|A|G|2766
2JL6|1|A|C|2767

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 9

50S RIBOSOMAL PROTEIN L36

Chain H

50S RIBOSOMAL PROTEIN L6

Chain N

50S RIBOSOMAL PROTEIN L13