IL_2JL7_008

3D structure

PDB id

2JL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

2JL7|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL7_008 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.135

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

2JL7|1|A|G|148
2JL7|1|A|A|149
2JL7|1|A|C|150
2JL7|1|A|A|151
2JL7|1|A|A|152
2JL7|1|A|C|153
*
2JL7|1|A|G|168
2JL7|1|A|C|169
2JL7|1|A|U|170
2JL7|1|A|A|171
2JL7|1|A|A|172
2JL7|1|A|U|173
2JL7|1|A|C|174

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20