IL_2JL7_015

3D structure

PDB id

2JL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL7_015 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.1605

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

2JL7|1|A|G|409
2JL7|1|A|G|410
2JL7|1|A|A|411
2JL7|1|A|A|412
2JL7|1|A|G|413
2JL7|1|A|A|414
2JL7|1|A|A|415
2JL7|1|A|G|416
*
2JL7|1|A|U|427
2JL7|1|A|G|428
2JL7|1|A|U|429
2JL7|1|A|A|430
2JL7|1|A|A|431
2JL7|1|A|A|432
2JL7|1|A|C|433

Current chains

Chain A

16S RRNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4