IL_2JL7_017

3D structure

PDB id

2JL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL7_017 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.13

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

2JL7|1|A|G|450
2JL7|1|A|A|451
2JL7|1|A|A|452
2JL7|1|A|A|453
2JL7|1|A|C|454
2JL7|1|A|C|455
*
2JL7|1|A|G|476
2JL7|1|A|A|477
2JL7|1|A|C|479
2JL7|1|A|U|480
2JL7|1|A|G|481
2JL7|1|A|A|482
2JL7|1|A|C|483

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16