IL_2JL7_018

3D structure

PDB id

2JL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL7_018 not in the Motif Atlas

Geometric match to IL_4LFB_020

Geometric discrepancy: 0.1142

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

2JL7|1|A|C|504
2JL7|1|A|G|505
2JL7|1|A|G|506
2JL7|1|A|C|507
2JL7|1|A|C|508
2JL7|1|A|A|509
2JL7|1|A|A|510
2JL7|1|A|C|511
*
2JL7|1|A|G|540
2JL7|1|A|G|541

Current chains

Chain A

16S RRNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4

Chain L

30S RIBOSOMAL PROTEIN S12