IL_2JL7_052

3D structure

PDB id

2JL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

2JL7|1|A|A|1492, 2JL7|1|A|A|1493

QA status

Modified nucleotides:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL7_052 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2391

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

2JL7|1|A|C|1407
2JL7|1|A|A|1408
2JL7|1|A|C|1409
*
2JL7|1|A|G|1491
2JL7|1|A|A|1492
2JL7|1|A|A|1493
2JL7|1|A|G|1494

Current chains

Chain A

16S RRNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12

Chain X

MRNA

Chain Y

PEPTIDE CHAIN RELEASE FACTOR 2