IL_2JL7_057

3D structure

PDB id

2JL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

2JL7|1|A|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL7_057 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.378

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

2JL7|1|A|C|1440
2JL7|1|A|G|1441
2JL7|1|A|G|1442
2JL7|1|A|G|1442|||A
2JL7|1|A|A|1442|||B
2JL7|1|A|G|1443
*
2JL7|1|A|C|1459
2JL7|1|A|A|1460
2JL7|1|A|G|1461

Current chains

Chain A

16S RRNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20