IL_2JL8_012

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCAG*UGGGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL8_012 not in the Motif Atlas

Geometric match to IL_5TBW_114

Geometric discrepancy: 0.3448

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

2JL8|1|A|C|287
2JL8|1|A|C|288
2JL8|1|A|A|289
2JL8|1|A|G|290
*
2JL8|1|A|U|350
2JL8|1|A|G|351
2JL8|1|A|G|352
2JL8|1|A|G|353
2JL8|1|A|G|354

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains