Motif IL_09705.12 Version IL_09705.12 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3DIL_002 | 3DIL | 0.4666 | 0 | Double sheared | A | RNA (174-MER) | C | 70 | G | 71 | A | 72 | G | 73 | * | C | 19 | G | 20 | A | 21 | G | 22 | cWW | tSH | tHS | cWW | |
2 | IL_8C3A_475 | 8C3A | 0.2661 | 0 | Double sheared | CM | SSU rRNA | C | 1640 | G | 1641 | A | 1642 | U | 1643 | * | A | 1731 | G | 1732 | A | 1733 | G | 1734 | cWW | tSH | tHS | cWW | |
3 | IL_4V88_468 | 4V88 | 0.2865 | 0 | Double sheared | A6 | SSU rRNA | C | 1653 | G | 1654 | A | 1655 | U | 1656 | * | A | 1744 | G | 1745 | A | 1746 | G | 1747 | cWW | tSH | tHS | cWW | |
4 | IL_5J7L_062 | 5J7L | 0.4099 | 0 | Double sheared | AA | SSU rRNA | G | 1416 | G | 1417 | A | 1418 | G | 1419 | * | U | 1481 | G | 1482 | A | 1483 | C | 1484 | cWW | tSH | tHS | cWW | |
5 | IL_6CZR_169 | 6CZR | 0.4206 | 0 | Double sheared | 1a | SSU rRNA | G | 1399 | G | 1400 | A | 1401 | G | 1402 | * | U | 1459 | G | 1460 | A | 1461 | C | 1462 | cWW | tSH | tHS | cWW | |
6 | IL_4V9F_100 | 4V9F | 0.3713 | 0 | Double sheared | 0 | LSU rRNA | C | 2873 | G | 2874 | A | 2875 | G | 2876 | * | C | 2881 | G | 2882 | A | 2883 | G | 2884 | cWW | tSH | tHS | cWW | |
7 | IL_8C3A_141 | 8C3A | 0.4365 | 0 | Double sheared; A in syn | 1 | LSU rRNA | A | 3307 | G | 3308 | A | 3309 | G | 3310 | * | C | 3325 | G | 3326 | A | 3327 | U | 3328 | cWW | cWW | |||
8 | IL_5TBW_135 | 5TBW | 0.6301 | 0 | Double sheared; A in syn | 1 | LSU rRNA | A | 3342 | G | 3343 | A | 3344 | G | 3345 | * | C | 3360 | G | 3361 | A | 3362 | U | 3363 | cWW | ntSs | cWW | ||
9 | IL_8T29_001 | 8T29 | 0.2840 | 0 | Double sheared; A in syn | R | RNA (90-MER) | G | 80 | A | 81 | A | 82 | G | 83 | * | C | 8 | G | 9 | A | 10 | C | 11 | cWW | tSH | ntWS | cWW | |
10 | IL_6YML_002 | 6YML | 0.2646 | 0 | Double sheared | A | Chains: A,C | C | 12 | A | 13 | A | 14 | C | 15 | * | G | 24 | G | 25 | C | 26 | G | 27 | cWW | tSH | ntHS | cWW | |
11 | IL_6YL5_010 | 6YL5 | 0.2590 | 0 | Double sheared | I | Chains: A,B,C,D,E,F,G,H,I,J,K,L | C | 12 | A | 13 | A | 14 | C | 15 | * | G | 24 | G | 25 | C | 26 | G | 27 | cWW | tSH | tHS | cWW | |
12 | IL_4KZD_002 | 4KZD | 0.2017 | 0 | Double sheared | R | RNA (84-MER) | U | 71 | A | 72 | A | 73 | C | 74 | * | G | 11 | A | 12 | A | 13 | A | 14 | cWW | tSH | tHS | cWW | |
13 | IL_4LFB_060 | 4LFB | 0.1692 | 0 | Double sheared | A | SSU rRNA | U | 1481 | G | 1482 | A | 1483 | C | 1484 | * | G | 1416 | G | 1417 | A | 1418 | G | 1419 | cWW | tSH | tHS | cWW | |
14 | IL_4XWF_001 | 4XWF | 0.1502 | 0 | Double sheared | A | ZMP/ZTP riboswitch | U | 7 | G | 8 | A | 9 | C | 10 | * | G | 36 | G | 37 | A | 38 | G | 39 | cWW | tSH | tHS | cWW | |
15 | IL_5BTP_004 | 5BTP | 0.1631 | 0 | Double sheared | B | RNA (62-MER) | U | 12 | G | 13 | A | 14 | C | 15 | * | G | 41 | A | 42 | A | 43 | G | 44 | cWW | tSH | tHS | cWW | |
16 | IL_6WZR_001 | 6WZR | 0.1707 | 0 | Double sheared | A | ZMP/ZTP riboswitch | U | 12 | G | 13 | A | 14 | C | 15 | * | G | 41 | A | 42 | A | 43 | G | 44 | cWW | tSH | tHS | cWW | |
17 | IL_3D0U_002 | 3D0U | 0.1874 | 0 | Double sheared | A | Lysine Riboswitch RNA | C | 67 | G | 68 | A | 69 | G | 70 | * | C | 16 | G | 17 | A | 18 | G | 19 | cWW | tSH | tHS | cWW | |
18 | IL_1SA9_002 | 1SA9 | 0.1810 | 0 | Double sheared | D+C | RNA (8-mer) | C | 211 | G | 212 | A | 213 | G | 214 | * | C | 203 | G | 204 | A | 205 | G | 206 | cWW | ntSH | tHS | cWW | |
19 | IL_5AOX_003 | 5AOX | 0.1577 | 0 | Double sheared | C | ALU JO CONSENSUS RNA | A | 105 | G | 106 | A | 107 | C | 108 | * | G | 58 | G | 59 | A | 60 | U | 61 | cWW | tSH | tHS | cWW | |
20 | IL_4WF9_016 | 4WF9 | 0.1744 | 0 | Double sheared | X | LSU rRNA | U | 597 | G | 598 | A | 599 | U | 600 | * | A | 581 | G | 582 | A | 583 | G | 584 | cWW | tSH | tHS | cWW | |
21 | IL_5J7L_256 | 5J7L | 0.2077 | 0 | Double sheared | DA | LSU rRNA | U | 554 | G | 555 | A | 556 | C | 557 | * | G | 536 | G | 537 | A | 538 | G | 539 | cWW | tSH | tHS | cWW | |
22 | IL_1SAQ_002 | 1SAQ | 0.1909 | 0 | Double sheared | A+B | RNA (8-mer) | C | 103 | G | 104 | A | 105 | G | 106 | * | C | 111 | G | 112 | A | 113 | G | 114 | cWW | tSH | tHS | cWW | |
23 | IL_8C3A_404 | 8C3A | 0.1892 | 0 | Double sheared | CM | SSU rRNA | C | 184 | G | 185 | A | 186 | C | 187 | * | G | 194 | A | 195 | A | 196 | G | 197 | cWW | tSH | tHS | cWW | |
24 | IL_8VTW_088 | 8VTW | 0.1088 | 0 | Double sheared | 1A | LSU rRNA | C | 2350 | G | 2351 | A | 2352 | G | 2353 | * | C | 2364 | G | 2365 | A | 2366 | G | 2367 | cWW | tSH | tHS | cWW | |
25 | IL_5J7L_333 | 5J7L | 0.0000 | 0 | Double sheared | DA | LSU rRNA | C | 2350 | G | 2351 | A | 2352 | G | 2353 | * | C | 2364 | G | 2365 | A | 2366 | G | 2367 | cWW | tSH | tHS | cWW | |
26 | IL_4WF9_087 | 4WF9 | 0.1052 | 0 | Double sheared | X | LSU rRNA | C | 2377 | G | 2378 | A | 2379 | G | 2380 | * | C | 2391 | G | 2392 | A | 2393 | G | 2394 | cWW | tSH | tHS | cWW | |
27 | IL_7A0S_081 | 7A0S | 0.1471 | 0 | Double sheared | X | LSU rRNA | C | 2329 | G | 2330 | A | 2331 | G | 2332 | * | C | 2343 | G | 2344 | A | 2345 | G | 2346 | cWW | tSH | ntHS | cWW | |
28 | IL_4V88_396 | 4V88 | 0.1895 | 0 | Double sheared | A6 | SSU rRNA | C | 186 | G | 187 | A | 188 | C | 189 | * | G | 196 | A | 197 | A | 198 | G | 199 | cWW | tSH | tHS | cWW | |
29 | IL_4ZNP_002 | 4ZNP | 0.2358 | 0 | Double sheared | A | pfI Riboswitch | G | 9 | G | 10 | A | 11 | C | 12 | * | G | 37 | G | 38 | A | 39 | C | 40 | cWW | tSH | tHS | cWW | |
30 | IL_8C3A_478 | 8C3A | 0.2686 | 0 | Double sheared | CM | SSU rRNA | U | 1656 | G | 1657 | A | 1658 | G | 1659 | * | C | 1716 | A | 1717 | A | 1718 | A | 1719 | cWW | tSH | tHS | cWW | |
31 | IL_4V88_471 | 4V88 | 0.2675 | 0 | Double sheared | A6 | SSU rRNA | U | 1669 | G | 1670 | A | 1671 | G | 1672 | * | C | 1729 | A | 1730 | A | 1731 | A | 1732 | cWW | tSH | tHS | cWW | |
32 | IL_4UYK_005 | 4UYK | 0.2605 | 0 | Double sheared | R | SRP RNA | C | 121 | C | 122 | A | 123 | C | 124 | * | G | 77 | G | 78 | C | 79 | G | 80 | cWW | ncWw | tHS | cWW | |
33 | IL_4LFB_067 | 4LFB | 0.3546 | 0 | Double sheared | A | SSU rRNA | C | 1259 | C | 1260 | A | 1261 | C | 1262 | * | G | 1273 | G | 1274 | A | 1275 | G | 1276 | cWW | ncWW | ntSH | tHS | cWW |
34 | IL_8C3A_123 | 8C3A | 0.3625 | 2 | Double sheared | 1 | LSU rRNA | A | 3111 | G | 3112 | A | 3113 | G | 3116 | * | C | 2976 | A | 2977 | A | 2978 | U | 2979 | cWW | tSH | tHS | cWW | |
35 | IL_5TBW_114 | 5TBW | 0.3831 | 2 | Double sheared | 1 | LSU rRNA | C | 3004 | A | 3005 | A | 3006 | U | 3007 | * | A | 3139 | G | 3140 | A | 3141 | G | 3144 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAG*CGAG | 9 |
UGAC*GGAG | 3 |
CGAU*AGAG | 2 |
GGAG*UGAC | 2 |
AGAG*CGAU | 2 |
CAAC*GGCG | 2 |
UGAC*GAAG | 2 |
CGAC*GAAG | 2 |
UGAG*CAAA | 2 |
GAAG*CGAC | 1 |
UAAC*GAAA | 1 |
AGAC*GGAU | 1 |
UGAU*AGAG | 1 |
GGAC*GGAC | 1 |
CCAC*GGCG | 1 |
CCAC*GGAG | 1 |
AGAACG*CAAU | 1 |
CAAU*AGAACG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GA*GA | 21 |
GA*AA | 6 |
AA*GC | 2 |
AA*GA | 1 |
AA*AA | 1 |
CA*GC | 1 |
CA*GA | 1 |
GAAC*AA | 1 |
AA*GAAC | 1 |
- Annotations
-
- Double sheared (32)
- Double sheared; A in syn (3)
- Basepair signature
- cWW-tSH-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.33 | Max 0.90
Coloring options: