#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-62-73-64-5
1 IL_3DIL_0023DIL0.46660Double shearedARNA (174-MER)C70G71A72G73*C19G20A21G22cWWtSHtHScWW
2 IL_8C3A_4758C3A0.26610Double shearedCM SSU rRNAC1640G1641A1642U1643*A1731G1732A1733G1734cWWtSHtHScWW
3 IL_4V88_4684V880.28650Double shearedA6 SSU rRNAC1653G1654A1655U1656*A1744G1745A1746G1747cWWtSHtHScWW
4 IL_5J7L_0625J7L0.40990Double shearedAA SSU rRNAG1416G1417A1418G1419*U1481G1482A1483C1484cWWtSHtHScWW
5 IL_6CZR_1696CZR0.42060Double sheared1a SSU rRNAG1399G1400A1401G1402*U1459G1460A1461C1462cWWtSHtHScWW
6 IL_4V9F_1004V9F0.37130Double sheared0 LSU rRNAC2873G2874A2875G2876*C2881G2882A2883G2884cWWtSHtHScWW
7 IL_8C3A_1418C3A0.43650Double sheared; A in syn1 LSU rRNAA3307G3308A3309G3310*C3325G3326A3327U3328cWWcWW
8 IL_5TBW_1355TBW0.63010Double sheared; A in syn1 LSU rRNAA3342G3343A3344G3345*C3360G3361A3362U3363cWWntSscWW
9 IL_8T29_0018T290.28400Double sheared; A in synRRNA (90-MER)G80A81A82G83*C8G9A10C11cWWtSHntWScWW
10 IL_6YML_0026YML0.26460Double shearedAChains: A,CC12A13A14C15*G24G25C26G27cWWtSHntHScWW
11 IL_6YL5_0106YL50.25900Double shearedIChains: A,B,C,D,E,F,G,H,I,J,K,LC12A13A14C15*G24G25C26G27cWWtSHtHScWW
12 IL_4KZD_0024KZD0.20170Double shearedRRNA (84-MER)U71A72A73C74*G11A12A13A14cWWtSHtHScWW
13 IL_4LFB_0604LFB0.16920Double shearedA SSU rRNAU1481G1482A1483C1484*G1416G1417A1418G1419cWWtSHtHScWW
14 IL_4XWF_0014XWF0.15020Double shearedAZMP/ZTP riboswitchU7G8A9C10*G36G37A38G39cWWtSHtHScWW
15 IL_5BTP_0045BTP0.16310Double shearedBRNA (62-MER)U12G13A14C15*G41A42A43G44cWWtSHtHScWW
16 IL_6WZR_0016WZR0.17070Double shearedAZMP/ZTP riboswitchU12G13A14C15*G41A42A43G44cWWtSHtHScWW
17 IL_3D0U_0023D0U0.18740Double shearedALysine Riboswitch RNAC67G68A69G70*C16G17A18G19cWWtSHtHScWW
18 IL_1SA9_0021SA90.18100Double shearedD+CRNA (8-mer)C211G212A213G214*C203G204A205G206cWWntSHtHScWW
19 IL_5AOX_0035AOX0.15770Double shearedCALU JO CONSENSUS RNAA105G106A107C108*G58G59A60U61cWWtSHtHScWW
20 IL_4WF9_0164WF90.17440Double shearedX LSU rRNAU597G598A599U600*A581G582A583G584cWWtSHtHScWW
21 IL_5J7L_2565J7L0.20770Double shearedDA LSU rRNAU554G555A556C557*G536G537A538G539cWWtSHtHScWW
22 IL_1SAQ_0021SAQ0.19090Double shearedA+BRNA (8-mer)C103G104A105G106*C111G112A113G114cWWtSHtHScWW
23 IL_8C3A_4048C3A0.18920Double shearedCM SSU rRNAC184G185A186C187*G194A195A196G197cWWtSHtHScWW
24 IL_8VTW_0888VTW0.10880Double sheared1A LSU rRNAC2350G2351A2352G2353*C2364G2365A2366G2367cWWtSHtHScWW
25 IL_5J7L_3335J7L0.00000Double shearedDA LSU rRNAC2350G2351A2352G2353*C2364G2365A2366G2367cWWtSHtHScWW
26 IL_4WF9_0874WF90.10520Double shearedX LSU rRNAC2377G2378A2379G2380*C2391G2392A2393G2394cWWtSHtHScWW
27 IL_7A0S_0817A0S0.14710Double shearedX LSU rRNAC2329G2330A2331G2332*C2343G2344A2345G2346cWWtSHntHScWW
28 IL_4V88_3964V880.18950Double shearedA6 SSU rRNAC186G187A188C189*G196A197A198G199cWWtSHtHScWW
29 IL_4ZNP_0024ZNP0.23580Double shearedApfI RiboswitchG9G10A11C12*G37G38A39C40cWWtSHtHScWW
30 IL_8C3A_4788C3A0.26860Double shearedCM SSU rRNAU1656G1657A1658G1659*C1716A1717A1718A1719cWWtSHtHScWW
31 IL_4V88_4714V880.26750Double shearedA6 SSU rRNAU1669G1670A1671G1672*C1729A1730A1731A1732cWWtSHtHScWW
32 IL_4UYK_0054UYK0.26050Double shearedRSRP RNAC121C122A123C124*G77G78C79G80cWWncWwtHScWW
33 IL_4LFB_0674LFB0.35460Double shearedA SSU rRNAC1259C1260A1261C1262*G1273G1274A1275G1276cWWncWWntSHtHScWW
34 IL_8C3A_1238C3A0.36252Double sheared1 LSU rRNAA3111G3112A3113G3116*C2976A2977A2978U2979cWWtSHtHScWW
35 IL_5TBW_1145TBW0.38312Double sheared1 LSU rRNAC3004A3005A3006U3007*A3139G3140A3141G3144cWWtSHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAG*CGAG9
UGAC*GGAG3
CGAU*AGAG2
GGAG*UGAC2
AGAG*CGAU2
CAAC*GGCG2
UGAC*GAAG2
CGAC*GAAG2
UGAG*CAAA2
GAAG*CGAC1
UAAC*GAAA1
AGAC*GGAU1
UGAU*AGAG1
GGAC*GGAC1
CCAC*GGCG1
CCAC*GGAG1
AGAACG*CAAU1
CAAU*AGAACG1
Non-Watson-Crick part of the motif
SequenceCounts
GA*GA21
GA*AA6
AA*GC2
AA*GA1
AA*AA1
CA*GC1
CA*GA1
GAAC*AA1
AA*GAAC1

Release history

Release3.883.89
Date2024-09-112024-10-09
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Double sheared (32)
  • Double sheared; A in syn (3)
  • Basepair signature
    cWW-tSH-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.33 | Max 0.90
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