IL_2JL8_016

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL8_016 not in the Motif Atlas

Geometric match to IL_7RQB_016

Geometric discrepancy: 0.0584

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

2JL8|1|A|U|606
2JL8|1|A|U|607
2JL8|1|A|A|608
2JL8|1|A|A|609
2JL8|1|A|G|610
*
2JL8|1|A|C|618
2JL8|1|A|G|619
2JL8|1|A|G|620
2JL8|1|A|A|621
2JL8|1|A|G|622

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S RIBOSOMAL PROTEIN L4

Chain P

50S RIBOSOMAL PROTEIN L15