IL_2JL8_051

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

2JL8|1|A|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL8_051 not in the Motif Atlas

Geometric match to IL_7RQB_052

Geometric discrepancy: 0.0838

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

2JL8|1|A|C|1351
2JL8|1|A|U|1352
2JL8|1|A|A|1353
2JL8|1|A|A|1354
2JL8|1|A|G|1355
*
2JL8|1|A|C|1376
2JL8|1|A|G|1377
2JL8|1|A|A|1378
2JL8|1|A|A|1379
2JL8|1|A|G|1380

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 7

50S RIBOSOMAL PROTEIN L34

Chain D

50S RIBOSOMAL PROTEIN L2