IL_2JL8_074

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

2JL8|1|A|A|1938, 2JL8|1|A|U|1944, 2JL8|1|A|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL8_074 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1113

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.2

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

2JL8|1|A|C|1934
2JL8|1|A|G|1935
2JL8|1|A|A|1936
2JL8|1|A|A|1937
2JL8|1|A|A|1938
2JL8|1|A|U|1939
2JL8|1|A|U|1940
2JL8|1|A|C|1941
2JL8|1|A|C|1942
2JL8|1|A|U|1943
2JL8|1|A|U|1944
2JL8|1|A|G|1945
*
2JL8|1|A|C|1961
2JL8|1|A|C|1962
2JL8|1|A|U|1963
2JL8|1|A|G|1964

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L2