IL_2JQ7_002

3D structure

PDB id

2JQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton binding to the ribosomal L11-RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

2JQ7|1|B|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JQ7_002 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3305

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

2JQ7|1|B|G|1087
2JQ7|1|B|A|1088
2JQ7|1|B|G|1089
2JQ7|1|B|U|1090
2JQ7|1|B|G|1091
*
2JQ7|1|B|C|1100
2JQ7|1|B|U|1101
2JQ7|1|B|C|1102

Current chains

Chain B

RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L11