IL_2JUK_006

3D structure

PDB id

2JUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

guanidino neomycin B recognition of an HIV-1 RNA helix

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUUC,GAAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JUK_006 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3114

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

2JUK|6|A|C|4
2JUK|6|A|U|5
2JUK|6|A|U|6
2JUK|6|A|C|7
*
2JUK|6|A|G|16
2JUK|6|A|A|17
2JUK|6|A|A|18
2JUK|6|A|G|19

Current chains

Chain A

HIV-1 frameshift site RNA

Nearby chains