IL_2JUK_018

3D structure

PDB id

2JUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

guanidino neomycin B recognition of an HIV-1 RNA helix

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UCC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCC,GGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JUK_018 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.2209

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

2JUK|19|A|U|6
2JUK|19|A|C|7
2JUK|19|A|C|8
*
2JUK|19|A|G|15
2JUK|19|A|G|16
2JUK|19|A|A|17

Current chains

Chain A

HIV-1 frameshift site RNA

Nearby chains