IL_2JYJ_005

3D structure

PDB id

2JYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Re-refining the tetraloop-receptor RNA-RNA complex using NMR-derived restraints and Xplor-nih (2.18)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UAUG*CUAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JYJ_005 not in the Motif Atlas

Geometric match to IL_6AZ4_002

Geometric discrepancy: 0.267

The information below is about IL_6AZ4_002

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_87739.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

10

Unit IDs

2JYJ|3|A|U|5
2JYJ|3|A|A|6
2JYJ|3|A|U|7
2JYJ|3|A|G|8
*
2JYJ|3|A|C|35
2JYJ|3|A|U|36
2JYJ|3|A|A|37
2JYJ|3|A|A|38
2JYJ|3|A|G|39

Current chains

Chain A

RNA (43-MER)

Nearby chains

Chain B

RNA (43-MER)