IL_2K7E_010

3D structure

PDB id

2K7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the human tRNALys3 bound to the HIV genome Loop I

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AAA*U(SUR)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2K7E_010 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.1857

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

2K7E|5|A|A|9
2K7E|5|A|A|10
2K7E|5|A|A|11
*
2K7E|5|B|U|2
2K7E|5|B|SUR|3
2K7E|5|B|U|4

Current chains

Chain A

RNA (5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3')

Chain B

RNA (5'-R(*CP*UP*(SUR)P*UP*UP*AP*AP*(PSU)P*CP*UP*GP*C)-3')

Nearby chains