IL_2K96_015

3D structure

PDB id

2K96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the RDC-refined P2B-P3 pseudoknot from human telomerase RNA (delta U177)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2K96_015 not in the Motif Atlas

Geometric match to IL_5F5F_001

Geometric discrepancy: 0.2211

The information below is about IL_5F5F_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

2K96|11|A|G|110
2K96|11|A|A|111
2K96|11|A|C|112
*
2K96|11|A|G|178
2K96|11|A|U|179
2K96|11|A|C|180

Current chains

Chain A

TELOMERASE RNA P2B-P3 PSEUDOKNOT

Nearby chains