IL_10892.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_9DFE_023	9DFE	0.5075	1	Other IL	1A	LSU rRNA	C	844	G	845	C	846	*	G	931	A	933	G	934	cWW		cWW
2	IL_8CRE_432	8CRE	0.4034	1	Isolated cWH basepair	CM	SSU rRNA	G	942	U	943	U	945	*	G	853	A	854	C	855	cWW		ncWWa
3	IL_9AXU_053	9AXU	0.4501	1		2	LSU rRNA	A	1462	U	1464	G	1465	*	C	1410	G	1411	U	1412	cWW		cWW
4	IL_8CRE_441	8CRE	0.5150	1	Isolated cWH basepair (H)	CM	SSU rRNA	U	1036	U	1037	U	1039	*	A	1050	C	1051	G	1052	ncWW	cHW	cWW
5	IL_8GLP_336	8GLP	0.3848	0	Isolated cWH basepair (H)	S2	SSU rRNA	PSU	1347	G	1348	G	1349	*	C	1380	G	1381	A	1382	cWW	cHW	cWW
6	IL_7A0S_092	7A0S	0.4463	1	Other IL	X	LSU rRNA	A	2579	C	2580	G	2582	*	C	2570	G	2571	U	2572	cWW		cWW
7	IL_9AXU_019	9AXU	0.3963	0		2	LSU rRNA	G	588	U	589	U	590	*	A	536	A	537	U	538	cWW	cHW	cWW
8	IL_8P9A_442	8P9A	0.2509	0	Isolated cWH basepair	sR	SSU rRNA	U	1290	G	1291	G	1292	*	C	1323	G	1324	A	1325	cWW	cHW	cWW
9	IL_8GLP_157	8GLP	0.2430	0		L5	LSU rRNA	G	4721	G	4722	A	4723	*	U	4580	G	4581	C	4582	cWW	cHW	cWW
10	IL_3R1D_002	3R1D	0.1733	0	Isolated cWH basepair	A+B	RNA (11-mer)	C	5	G	6	G	7	*	C	5	G	6	G	7	cWW	cHW	cWW
11	IL_4WF9_045	4WF9	0.1872	0	Isolated cWH basepair	X	LSU rRNA	C	1277	G	1278	C	1279	*	G	1243	G	1244	G	1245	cWW	cHW	cWW
12	IL_8B0X_011	8B0X	0.1544	0	Isolated cWH basepair (H)	A	SSU rRNA	C	176	G	177	C	178	*	G	144	G	145	G	146	cWW	cHW	cWW
13	IL_8GLP_047	8GLP	0.1240	0		L5	LSU rRNA	U	1186	G	1187	C	1188	*	G	1173	G	1174	A	1175	cWW	cHW	cWW
14	IL_2R1S_002	2R1S	0.1220	0	Isolated cWH basepair	B+A	RNA (13-mer)	5BU	19	G	20	A	21	*	5BU	6	G	7	A	8	cWW	cHW	cWW
15	IL_3W3S_003	3W3S	0.0897	0	Isolated cWH basepair	B	Selenocysteine transfer RNA	G	47\|\|\|A	G	47\|\|\|B	U	47\|\|\|C	*	A	47\|\|\|N	G	47\|\|\|O	C	47\|\|\|P	cWW	cHW	cWW
16	IL_4KTG_003	4KTG	0.1107	0	Isolated cWH basepair	E+B	RNA (19-mer)	G	209	G	210	C	211	*	G	209	G	210	C	211	cWW	cHW	cWW
17	IL_4KQ0_003	4KQ0	0.0991	0	Isolated cWH basepair	B+E	RNA (19-mer)	C	9	G	10	G	11	*	C	9	G	10	G	11	cWW	cHW	cWW
18	IL_3R1C_018	3R1C	0.0000	0	Isolated cWH basepair	Q+R	RNA (8-mer)	C	5	G	6	G	7	*	C	2	G	3	G	4	cWW	cHW	cWW
19	IL_3R1C_012	3R1C	0.0530	0	Isolated cWH basepair	L+K	RNA (8-mer)	C	2	G	3	G	4	*	C	5	G	6	G	7	cWW	cHW	cWW
20	IL_3R1C_011	3R1C	0.0628	0	Isolated cWH basepair	K+L	RNA (8-mer)	C	2	G	3	G	4	*	C	5	G	6	G	7	cWW	cHW	cWW
21	IL_3SJ2_003	3SJ2	0.0584	0	Isolated cWH basepair	B+A	RNA (17-mer)	C	7	G	8	G	9	*	C	13	G	14	G	15	cWW	cHW	cWW
22	IL_3SJ2_002	3SJ2	0.0673	0	Isolated cWH basepair	A+B	RNA (19-mer) + RNA (17-mer)	C	10	G	11	G	12	*	C	10	G	11	G	12	cWW	cHW	cWW
23	IL_3R1C_017	3R1C	0.0817	0	Isolated cWH basepair	R+Q	RNA (8-mer)	C	5	G	6	G	7	*	C	2	G	3	G	4	cWW	cHW	cWW
24	IL_3CZW_001	3CZW	0.0640	0	Isolated cWH basepair	X	RNA (16-mer)	U	7	G	8	A	9	*	U	10\|\|\|\|2_555	G	11\|\|\|\|2_555	A	12\|\|\|\|2_555	cWW	cHW	cWW
25	IL_3SJ2_001	3SJ2	0.0757	0	Isolated cWH basepair	A+B	RNA (19-mer) + RNA (17-mer)	C	7	G	8	G	9	*	C	13	G	14	G	15	cWW	cHW	cWW
26	IL_3R1D_014	3R1D	0.0942	0	Isolated cWH basepair	A+B	RNA (11-mer)	C	2\|\|A	GRB	3\|\|A	G	4\|\|A	*	C	8	G	9	G	10	cWW	cHW	cWW
27	IL_4E5C_001	4E5C	0.1244	0	Isolated cWH basepair	B+A	RNA (19-mer)	C	9	G	10	G	11	*	C	9	G	10	G	11	cWW	cHW	cWW
28	IL_3R1D_003	3R1D	0.1384	0	Isolated cWH basepair	B+A	RNA (11-mer)	C	2\|\|A	GRB	3	G	4	*	C	8	G	9	G	10	cWW	cHW	cWW
29	IL_4KQ0_005	4KQ0	0.1311	0	Isolated cWH basepair	E+B	RNA (19-mer)	C	3	G	4	G	5	*	C	15	G	16	G	17	cWW	cHW	cWW
30	IL_4KQ0_001	4KQ0	0.1317	0	Isolated cWH basepair	B+E	RNA (19-mer)	C	3	G	4	G	5	*	C	15	G	16	G	17	cWW	cHW	cWW
31	IL_4KTG_005	4KTG	0.1726	0	Isolated cWH basepair	E+B	RNA (19-mer)	G	203	G	204	C	205	*	G	215	G	216	C	217	cWW	cHW	cWW
32	IL_4KTG_001	4KTG	0.1704	0	Isolated cWH basepair	B+E	RNA (19-mer)	G	203	G	204	C	205	*	G	215	G	216	C	217	cWW	cHW	cWW
33	IL_6IA2_003	6IA2	0.1803	0	Isolated cWH basepair	A+B	RNA (19-mer)	C	9	G	10\|\|A	G	11	*	C	9	G	10\|\|A	G	11\|\|A	cWW	cHW	cWW
34	IL_4J50_001	4J50	0.1734	0	Isolated cWH basepair	B+A	RNA (19-mer)	C	13	A	14	G	15	*	C	7	A	8	G	9	cWW		cWW
35	IL_4J50_003	4J50	0.1733	0	Isolated cWH basepair	A+B	RNA (19-mer)	C	13	A	14	G	15	*	C	7	A	8	G	9	cWW		cWW
36	IL_8GLP_324	8GLP	0.1604	0		S2	SSU rRNA	A	164	G	165	A2M	166	*	U	152	G	153	U	154	cWW	ncHW	cWW
37	IL_8GLP_162	8GLP	0.1256	0		L5	LSU rRNA	U	4638	G	4639	C	4640	*	G	4659	G	4660	G	4661	cWW	cHW	cWW
38	IL_2H1M_003	2H1M	0.1575	0	Isolated cWH basepair	B+A	RNA (16-mer)	A	21	G	22	U	23	*	A	10	A	11	U	12	cWW	ncHW	cWW
39	IL_2H1M_002	2H1M	0.1919	0	Isolated cWH basepair	A+B	RNA (16-mer)	A	5	G	6	U	7	*	A	26	A	27	U	28	cWW	ncHW	cWW
40	IL_3D0M_001	3D0M	0.1451	0	Isolated cWH basepair	X	RNA (16-mer)	U	7	G	8	A	9	*	U	10\|\|\|\|16_545	G	11\|\|\|\|16_545	A	12\|\|\|\|16_545	cWW	cHW	ncWW
41	IL_6RA4_002	6RA4	0.1645	0	Isolated cWH basepair	L+M	RNA (9-mer)	U	403	G	404	A	405	*	U	403	G	404	A	405	cWW	cHW	cWW
42	IL_4KQ0_002	4KQ0	0.1422	0	Isolated cWH basepair	B+E	RNA (19-mer)	C	6	G	7	G	8	*	C	12	G	13	G	14	cWW	cHW	cWW
43	IL_4KQ0_004	4KQ0	0.1431	0	Isolated cWH basepair	E+B	RNA (19-mer)	C	6	G	7	G	8	*	C	12	G	13	G	14	cWW	cHW	cWW
44	IL_4KTG_004	4KTG	0.1759	0	Isolated cWH basepair	B+E	RNA (19-mer)	G	212	G	213	C	214	*	G	206	G	207	C	208	cWW	cHW	cWW
45	IL_4KTG_002	4KTG	0.1813	0	Isolated cWH basepair	E+B	RNA (19-mer)	G	212	G	213	C	214	*	G	206	G	207	C	208	cWW	cHW	cWW
46	IL_4WF9_121	4WF9	0.2018	0	Isolated cWH basepair	Y	5S rRNA	C	110	A	111	G	112	*	U	3	G	4	G	5	cWW	ncHW	ncWWa
47	IL_7QQX_005	7QQX	0.2607	0	Isolated cWH basepair	A+C	tracrRNA + FANCF off-target5 target strand	U	12	G	13	C	14	*	DG	7	DG	8	DA	9	cWW	cHW	cWW
48	IL_8GLP_213	8GLP	0.2181	0	Isolated cWH basepair (H)	S2	SSU rRNA	G	437	G	438	A	439	*	U	454	A	455	C	456	cWW	cHW	cWW
49	IL_8CRE_411	8CRE	0.2242	0	Isolated cWH basepair	CM	SSU rRNA	G	387	G	388	A	389	*	U	404	A	405	C	406	cWW	cHW	cWW
50	IL_8P9A_394	8P9A	0.2230	0	Isolated cWH basepair	sR	SSU rRNA	G	389	G	390	A	391	*	U	406	A	407	C	408	cWW	cHW	cWW
51	IL_5F5F_003	5F5F	0.2153	0	Isolated cWH basepair	F	RNA (20-mer)	U	5	G	6	C	7	*	G	14	G	15	A	16	cWW	cHW	cWW
52	IL_5F5F_001	5F5F	0.2268	0	Isolated cWH basepair	B	RNA (20-mer)	U	5	G	6	C	7	*	G	14	G	15	A	16	cWW	cHW	cWW
53	IL_7MLW_006	7MLW	0.4034	0	Isolated tWW contact	F	Guanidine-I riboswitch	C	71	U	72	U	73	*	A	92	C	93	G	94	cWW		cWW
54	IL_8AF0_002	8AF0	0.2853	0	Isolated cWH basepair	D+C	RNA (19-mer)	G	34	U	35	C	36	*	G	34	U	35	C	36	cWW	cHW	cWW
55	IL_8GLP_245	8GLP	0.2915	0		S2	SSU rRNA	G	1129	G	1130	G	1131	*	U	1101	G	1102	C	1103	cWW	cHW	cWW
56	IL_8GLP_308	8GLP	0.4095	0		L5	LSU rRNA	OMG	3944	A	3945	G	3946	*	U	4067	U	4068	U	4069	cWW	cHW	cWW
57	IL_8CRE_405	8CRE	0.4673	1	Isolated cWH basepair	CM	SSU rRNA	G	285	A	286	U	287	*	A	263	U	265	C	266	cWW		cWW
58	IL_8AMI_001	8AMI	0.5541	0	Other IL	B+A	RNA (9-mer)	U	4	G	5\|\|A	G	6	*	U	4	G	5	G	6	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGG*CGG	15
GGC*GGC	5
UGC*GGA	4
UGA*UGA	3
GGA*UAC	3
CGC*GGG	2
C(GRB)G*CGG	2
CAG*CAG	2
AGU*AAU	2
CGC*GGAG	1
GUUU*GAC	1
AGUG*CGU	1
UUGU*ACG	1
(PSU)GG*CGA	1
ACAG*CGU	1
GUU*AAU	1
UGG*CGA	1
GGA*UGC	1
(5BU)GA*(5BU)GA	1
GGU*AGC	1
AG(A2M)*UGU	1
UGC*GGG	1
CAG*UGG	1
CUU*ACG	1
GUC*GUC	1
GGG*UGC	1
(OMG)AG*UUU	1
GAU*AAUC	1
UGG*UGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*G	38
G*A	5
(GRB)*G	2
A*A	2
G*GA	1
UU*A	1
GU*G	1
UG*C	1
CA*G	1
U*A	1
A*G	1
U*C	1
U*U	1
A*U	1
A*AU	1

Release history

Release	4.1
Date	2025-09-10
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_10892.2 Version IL_10892.2 of this group appears in releases 4.1 to 4.1 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_10892.2 Version IL_10892.2 of this group appears in releases 4.1 to 4.1

Download

Csv

Json