IL_2KMJ_009

3D structure

PDB id

2KMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution NMR solution structure of a complex of HIV-2 TAR RNA and a synthetic tripeptide in a 1:2 stoichiometry

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AUUG*CU

Length

6 nucleotides

Bulged bases

2KMJ|9|A|U|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2KMJ_009 not in the Motif Atlas

Geometric match to IL_1NTA_001

Geometric discrepancy: 0.2817

The information below is about IL_1NTA_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

2KMJ|9|A|A|22
2KMJ|9|A|U|23
2KMJ|9|A|U|25
2KMJ|9|A|G|26
*
2KMJ|9|A|C|39
2KMJ|9|A|U|40

Current chains

Chain A

RNA (28-MER)

Nearby chains

Chain B

Pyrimidinylpeptide

Chain C

Pyrimidinylpeptide