IL_2KPV_008

3D structure

PDB id

2KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR model of the first let-7 miRNA complementary site (LCS1) in 3'-UTR of lin-41 mRNA from C. elegans

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUA*UUC

Length

6 nucleotides

Bulged bases

2KPV|4|A|U|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2KPV_008 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.301

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

2KPV|4|A|G|8
2KPV|4|A|U|9
2KPV|4|A|A|10
*
2KPV|4|A|U|24
2KPV|4|A|U|25
2KPV|4|A|C|26

Current chains

Chain A

RNA (34-MER)

Nearby chains