2KPV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2KPV_001 | 1/A/14:19 | GNRA | geometric HL_3NDB_002 HL_37824.8 | |
| HL_2KPV_002 | 2/A/14:19 | GNRA | geometric HL_7A0S_047 HL_37824.8 | |
| HL_2KPV_003 | 3/A/14:19 | GNRA | geometric HL_5TBW_025 NA | |
| HL_2KPV_004 | 4/A/14:19 | GNRA | geometric HL_5FQ5_003 HL_37824.8 | |
| HL_2KPV_005 | 5/A/14:19 | GNRA | geometric HL_4FRG_002 HL_37824.8 | |
| HL_2KPV_006 | 6/A/14:19 | GNRA | geometric HL_5J7L_016 HL_37824.8 | |
| HL_2KPV_007 | 7/A/14:19 | GNRA | geometric HL_3CUL_001 HL_37824.8 | |
| HL_2KPV_008 | 8/A/14:19 | GNRA | geometric HL_4V9F_045 HL_37824.8 | |
| HL_2KPV_009 | 9/A/14:19 | GNRA | geometric HL_5FQ5_003 HL_37824.8 | |
| HL_2KPV_010 | 10/A/14:19 | GNRA | geometric HL_4FRG_002 HL_37824.8 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2KPV_001 | 1/A/4:5, 1/A/29:31 | Major groove intercalation | geometric IL_4WF9_071 IL_82107.5 | |
| IL_2KPV_002 | 1/A/8:11, 1/A/22:26 | No text annotation | ||
| IL_2KPV_025 | 2/A/4:5, 2/A/29:31 | Minor groove platform | geometric IL_1U6B_007 IL_51454.3 | |
| IL_2KPV_004 | 2/A/8:11, 2/A/22:26 | No text annotation | ||
| IL_2KPV_005 | 3/A/4:5, 3/A/29:31 | Minor groove platform | geometric IL_6DTD_003 IL_51454.3 | |
| IL_2KPV_006 | 3/A/8:11, 3/A/22:26 | No text annotation | ||
| IL_2KPV_007 | 4/A/4:5, 4/A/29:31 | Single stack bend | geometric IL_5VSU_003 IL_26793.1 | |
| IL_2KPV_008 | 4/A/8:10, 4/A/24:26 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_2KPV_009 | 4/A/10:11, 4/A/22:24 | No text annotation | ||
| IL_2KPV_010 | 5/A/4:5, 5/A/29:31 | Multiple bulged bases | geometric IL_8C3A_400 NA | |
| IL_2KPV_011 | 5/A/8:11, 5/A/22:26 | No text annotation | ||
| IL_2KPV_012 | 6/A/4:5, 6/A/29:31 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.5 | |
| IL_2KPV_013 | 6/A/8:10, 6/A/24:26 | Isolated cWH basepair | geometric IL_2W2H_002 NA | |
| IL_2KPV_014 | 6/A/10:11, 6/A/22:24 | No text annotation | ||
| IL_2KPV_015 | 7/A/4:5, 7/A/29:31 | Major groove intercalation | geometric IL_4WF9_071 IL_82107.5 | |
| IL_2KPV_016 | 7/A/8:11, 7/A/22:26 | No text annotation | ||
| IL_2KPV_017 | 8/A/4:5, 8/A/29:31 | Multiple bulged bases | geometric IL_8C3A_400 NA | |
| IL_2KPV_018 | 8/A/8:10, 8/A/24:26 | No text annotation | ||
| IL_2KPV_019 | 8/A/10:11, 8/A/22:24 | No text annotation | ||
| IL_2KPV_020 | 9/A/4:5, 9/A/29:31 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.5 | |
| IL_2KPV_021 | 9/A/8:10, 9/A/24:26 | No text annotation | ||
| IL_2KPV_022 | 9/A/10:11, 9/A/22:24 | No text annotation | ||
| IL_2KPV_023 | 10/A/4:5, 10/A/29:31 | Minor groove platform | geometric IL_6DTD_003 IL_51454.3 | |
| IL_2KPV_024 | 10/A/8:11, 10/A/22:26 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2KPV_003 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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