IL_2KTZ_015

3D structure

PDB id

2KTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Inhibitor Induced Structural Change in the HCV IRES Domain IIa RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2KTZ_015 not in the Motif Atlas

Geometric match to IL_3TZR_003

Geometric discrepancy: 0.1406

The information below is about IL_3TZR_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

2KTZ|5|A|C|15
2KTZ|5|A|U|16
2KTZ|5|A|U|17
2KTZ|5|A|C|18
*
2KTZ|5|A|G|25
2KTZ|5|A|U|26
2KTZ|5|A|C|27
2KTZ|5|A|G|28

Current chains

Chain A

HCV IRES Domain IIa RNA

Nearby chains