IL_2KYE_030

3D structure

PDB id

2KYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the pseudouridine modified P6.1 hairpin of human telomerase RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAG*C(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2KYE_030 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1968

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

2KYE|15|A|G|3
2KYE|15|A|A|4
2KYE|15|A|G|5
*
2KYE|15|A|C|11
2KYE|15|A|PSU|12
2KYE|15|A|C|13

Current chains

Chain A

RNA (5'-R(*GP*AP*GP*AP*GP*(PSU)P*(PSU)P*GP*GP*GP*CP*(PSU)P*CP*(PSU)P*C)-3')

Nearby chains